Past Workshops

fNIRS Virtual Workshop

On behalf of the FIT’NG Vision and Visibility Committee, organized by Dr. Laura Pirazzoli, Dr. Samantha McCann, and Dr. Sobana Wijeakumar, we presented a new series of fNIRS-focused workshops aimed at fNIRS researchers who worked with newborns, infants, or toddlers.

As part of our mission to advance knowledge for all neuroimaging methods used by developmental researchers, we brought together leading experts in the field to discuss the most pressing challenges in developmental fNIRS research. The four workshops tackled the topics of Co-registration, Physiological Noise, Resting State Functional Connectivity, and Inverted Responses. The goal of these workshops was to increase awareness around the importance of these topics, offer practical guidance to researchers based on current understanding, and, together, map the road for new research that would lead to advances in the developmental fNIRS field.

Organizers

Dr. Laura Pirazzoli, Charité- Universitätsmedizin Berlin
Dr. Samantha McCann, King’s College London
Dr. Sobana Wijeakumar, University of Nottingham

Inverted Responses

14th July, 4–6:30pm BST

The typical signature of activation in fNIRS data is positive HbO concentration and negative HbR concentration. However, some studies have reported observing the opposite trend (negative HbO and positive HbO). Till date, the origin or nature of this response remains unclear. Does this response represent a signature anchored to early development? Or is it yet uncorrected physiological artifact? Does this signature represent ‘suppression’ sometimes linked to specific cognitive processes? Is this response specific to a cortical region or network?

Presenters

Prof. Judit Gervain, Dr. Lauren Emberson, Prof. John Spencer and Dr. Gemma Bale will shed some brief insight on their own experiences with this fascinating response profile through a brief presentation and a panel discussion on important practical considerations, steps to move forward and discussions and points of action for consensus.

Preparation Materials

Issard C, Gervain J. Variability of the hemodynamic response in infants: Influence of experimental design and stimulus complexity. Dev Cogn Neurosci. 2018 Oct;33:182-193. doi: 10.1016/j.dcn.2018.01.009. Epub 2018 Feb 4. PMID: 29397345; PMCID: PMC6969282.

Emberson, L. L., Boldin, A. M., Riccio, J. E., Guillet, R., & Aslin, R. N. (2017). Deficits in Top-Down Sensory Prediction in Infants At Risk due to Premature Birth. Current biology : CB, 27(3), 431–436. https://doi.org/10.1016/j.cub.2016.12.028

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Co-registration

17th July, 4–6:30pm BST

The co-registration of scalp optode positioning to a brain atlas is a key step in ensuring fNIRS data is analysed and interpreted accurately. However, many of the tools commonly used for co-registration in adults (e.g. polhemus & 3D scanning) are not well suited to infants and young children. Options suitable for paediatric populations are burdensome on the researcher.

Presenters & Approaches

Within this workshop, Dr Adam Eggebrecht, Dr Rob Cooper and Dr Sagi Jaffe-Dax will introduce strategies they have developed to address co-registration in a more infant-friendly and researcher-friendly manner and discuss further steps needed to create the optimal tool for this field.
The featured approaches will be:

  1. Dr Rob Cooper’s work creating a more infant friendly mode of 3D scanning, using an iphone.
  2. Dr Adam Eggebrecht’s tool ‘Align Me’ which is seamlessly integrated into the NeuroDOT Matlab package.
  3. Dr Sagi Jaffe-Dax ‘s tool STORM-NET which aims to simplify and speed up the process of optode registration using automation.
Preparation Materials

STORM-Net: Simple and Timely Optode Registration Method for Functional Near-Infrared Spectroscopy (fNIRS)

Yotam Erel, Sagi Jaffe-Dax, Yaara Yeshurun, Amit H. Bermano

https://github.com/yoterel/STORM-Net

Frijia et al. 2021. Functional imaging of the developing brain with wearable high-density diffuse optical tomography: A new benchmark for infant neuroimaging outside the scanner environment, NeuroImage, Volume 225,117490, ISSN 1053-8119, https://doi.org/10.1016/j.neuroimage.2020.117490.

https://www.nitrc.org/projects/neurodot

https://github.com/WUSTL-ORL/NeuroDOT

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Physiological Noise

18th July, 4–7pm BST

While in the adult fNIRS field there are clear recommendations on how to isolate and remove physiological signals (i.e., short channel regression and external physiological measures), there is less clarity on what impact physiological signals have on infants and toddler data and how to minimize it. Expected outcomes of this workshop would include increasing developmental fNIRS researchers’ awareness of how physiological noise can impact their data, and presenting current options along with pros and cons.

Presenters & Approaches

Dr Meryem Yucel, Dr Sabrina Brigadoi and Dr Paola Pinti will discuss the strategies they implement in their research to deal with physiological noise and how these differ across different age groups. New research on this topic will be presented alongside a discussion of the further steps needed to increase consensus.

Preparation Materials

Brigadoi, S., & Cooper, R. J. (2015). How short is short? Optimum source–detector distance for short-separation channels in functional near-infrared spectroscopy. Neurophotonics2(2), 025005-025005.

Emberson, L. L., Crosswhite, S. L., Goodwin, J. R., Berger, A. J., & Aslin, R. N. (2016). Isolating the effects of surface vasculature in infant neuroimaging using short-distance optical channels: a combination of local and global effects. Neurophotonics3(3), 031406-031406.

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Functional Connectivity

19th July, 4–7pm BST

Resting state functional connectivity is a topic of increasing interest within infant fNIRS research, however there is still a lack of understanding as to best practice in data collection, pre-processing, and analytic approaches. This workshop aims to provide a ‘How to’ focused on how to obtain high-quality resting state fNIRS data in infancy and toddlerhood, in order to draw meaningful conclusions.

Presenters & Approaches

Dr Sabrina Brigadoi, Dr Chiara Bulgarelli, Dr Adam Eggebrecht and Dr Borja Blanco will discuss several common challenges researchers encounter and will provide age group specific recommendations drawing from their extensive experience. The demonstration of different approaches will be followed by a discussion on future steps needed to reach consensus.

Preparation Materials

Hu, Z., Liu, G., Dong, Q., & Niu, H. (2020). Applications of resting-state fNIRS in the developing brain: a review from the connectome perspective. Frontiers in neuroscience14, 476.

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10 Day Virtual Interactive Workshop 2023

FIT’NG hosted a 10-day virtual workshop series covering basic and advanced methods in developmental EEG/ERP. This workshop provided a much-needed space for developmental EEG/ERP researchers (including advanced users/PIs, novice users, and total beginners) to come together to discuss issues in methodological and analytic techniques uniquely relevant to developmental data (especially from infants, toddlers, and preschool children). The workshop also showcased cutting edge approaches to using EEG/ERP data to address open questions in developmental research.

Session goals were:

* Introduce the basic principles of the featured methodological approach.
* Showcase the methodological approach via examples of current research in the invited speaker’s lab or relevant data.
* Identify current best practices in the application of the featured approach.
* Brainstorm approaches to determining best practices where they are currently lacking.

SESSION RECORDINGS COMING SOON!

This workshop was brought to you by the Fetal, Infant, & Toddler Neuroimaging Group (FIT’NG) and is organized by Dr Lindsay Bowman and Dr Sam Wass on behalf of the Vision and Visibility Committee.

FIT’NG Events at Flux 2021

Full Day Workshop

FIT’NG All Ages: Advantages and Challenges of Longitudinal Fetal, Infant, and Toddler Neuroimaging (virtual)
Friday September 17; 9:00 am – 3:00 pm EST

Longitudinal MRI is essential for quantifying trajectories of brain change in typical development and in neurodevelopmental disorders. Rapid changes in brain anatomy and physiology during the prenatal, infant and toddler period necessitate longitudinal measurement but also present unique challenges for data acquisition, processing, and analysis. This satellite meeting will provide a forum for discussing these challenges and identifying possible solutions. Session 1 will focus on challenges relating to data collection (choice of sequence parameters and equipment, data acquisition procedures, and participant recruitment and retention) and data analysis (approaches to segmentation and parcellation, registration, and curve fitting). In Session 2, expert panelists will provide a ‘behind the scenes’ look at important decision points and strategies adopted in their own research designs, stimulating a live discussion of solutions to challenges inherent in longitudinal neuroimaging. Finally,  Session 3 will showcase new and exciting work utilizing longitudinal approaches discussed in preceding sessions.

DOWNLOAD SCHEDULE

Meeting Organizers

FIT’NG (Fetal, Infant, Toddler Neuroimaging Group)

Sarah Shultz, PhD, Emory University / Marcus Autism Center, USA (co-chair)

Dustin Scheinost, PhD, Yale University School of Medicine, USA (co-chair)

Zeena Ammar, Emory University / Marcus Autism Center, USA

Cat Camacho, Washington University in St. Louis, USA

Aiden Ford, Emory University / Marcus Autism Center, USA

Roxane Licandro, Vienna University of Technology, Austria

Kelly Vaughn, University of Texas Health Science Center at Houston, USA

Invited Speakers

Jonathan O’Muircheartaigh, PhD

Cassie Hendrix, PhD

Cynthia Rogers, MD

Georg  Langs, PhD

Lilla Zöllei, PhD

Kathryn Mills, PhD

Catherine Limperopoulous, PhD

Lana Vasung, MD, PhD

Jana Hutter, PhD

Weili Lin, PhD

Mirella Dapretto, PhD

Nadine Gaab, PhD

Sean Deoni, PhD

Gregor Kasprian, MD

Richard Bethlehem, PhD

Abstracts

Session 1 – Getting Started:  What to consider When Developing a Longitudinal Study

Jonathan O’Muircheartaigh
Multi-site, cross-sectional & longitudinal MRI studies in early life

Rapid nonlinear volumetric and contrast changes occur over the first 2 years of post-natal life. These changes make both acquisition and analysis over this period challenging (at best), especially when also dealing with multiple sites and scanners. This talk will give a short overview of approaches designed to deal with these problems at study design and analysis stages.

 

Cassie Hendrix
Recommendations for obtaining usable MRI data from newborns, infants, and toddlers based on reports from 54 experts

Neuroimaging enriched longitudinal research is riddled with difficulties that are exacerbated by the dramatic changes in behavioral and brain development in the first months and years after birth. Using reports obtained from 54 experts in early life MRI, this data-driven presentation will address developmental shifts and challenges in common data acquisition practices, scanning success rates, and MRI sequences across infancy and toddlerhood.

 

Cynthia Rogers
Challenges of Longitudinal Infant Neuroimaging Research

This presentation will review challenges faced when conducting longitudinal neuroimaging studies that begin during infancy and potential solutions to minimize them.

 

Georg Langs
The in-utero development of brain structure and function

In this talk I will discuss how we can study the early structural and functional development of the human brain before birth. I will focus on approaches to capture this rapid and complex development in fetal MRI data, addressing segmentation and longitudinal modelling . We will look at their shared and different characteristics, and draw some thoughts about related observations in the study of brain evolution.

 

Lilla Zöllei
Spatial alignment of the postnatal infant brain

I will discuss challenges related to finding spatial correspondences among MRI images of postnatal brain MRI in the volumetric is spherical domain. Additionally, I will introduce advantages related to analyzing longitudinal data sets and utilizing such data in a robust, consistent, and principled way.

 

Kathryn Mills
What is brain maturation anyway? Brief dispatches and head scratches on longitudinally modeling brain development across adolescence

This presentation will describe approaches and considerations in characterizing group- and individual-level developmental trajectories of brain development. While practical applications and resources will be presented, you might leave with as many questions as answers.

 

Session 2 – Making it work: A behind the scenes look at navigating important decision points

 

Leading experts in fetal, infant, and toddler neuroimaging will engage in an informal discussion of challenges faced when designing longitudinal neuroimaging protocols. Panelists will discuss common issues and share the successful (or even unsuccessful!) strategies they have implemented, providing a ‘behind the scenes’ look at the development of longitudinal study designs, protocols, and analysis pipelines. The discussion will be moderated, followed by a Q & A period with audience members. Two panel discussions will occur in parallel, one on fetal/infant longitudinal imaging (featuring Catherine Limperopoulous

Lana Vasung, and Jana Hutter) and the other on infant/toddler imaging (featuring Weili Lin, Mirella Dapretto, Nadine Gaab).

 

Session 3 – Moving Forward: Advances from Longitudinal Designs 

Sean Deoni
Continuous longitudinal associations between maturing brain structure and function

Longitudinal studies of pediatric brain and cognitive development provide important insight into the development of brain regions and systems the underlie cognitive domains and functions. However, to-date, analysis of this longitudinal data has been performed using mixed models, sliding window, or time-varying cross-sectional methods. While informative, these forms of analysis do not fully capture the time-dynamic aspects of the data. Here we will present an alternative method, functional varying coefficient modeling, that provides a time-dynamic picture of evolving brain function and varying associations with cognitive functions and skills.

 

Gregor Kasprian 
Optimizing prenatal medicine by advanced fetal brain imaging

Fetal brain imaging generates data, which allow us to better understand human brain  development in health and disease. While many research activities in the field aim for the production of generalizable knowledge, the use of fetal neuroimaging methods to optimize individual outcomes is rather limited. In this lecture, current approaches to implement advanced fetal neuroimaging tools to improve prenatal care in individual subjects will be discussed.

 

Richard Bethlehem
Brain chart for the human lifespan

Over the past 25 years, neuroimaging has become a ubiquitous tool in basic research and clinical studies of the human brain. However, there are no reference standards against which to anchor measures of individual differences in brain morphology, in contrast to growth charts for traits such as height and weight. Here, I will present efforts to build an interactive online resource (www.brainchart.io) to quantify individual differences in brain structure from any current or future magnetic resonance imaging (MRI) study, against models of expected age-related trends.

FIT’NG symposium
Infant Neuroimaging
Sunday September 19; 2:15pm – 3:45pm EST

Longitudinal MRI is essential for quantifying trajectories of brain change in typical development and in neurodevelopmental disorders. Rapid changes in brain anatomy and physiology during the prenatal, infant and toddler period necessitate longitudinal measurement but also present unique challenges for data acquisition, processing, and analysis. This satellite meeting will provide a forum for discussing these challenges and identifying possible solutions. Session 1 will focus on challenges relating to data collection (choice of sequence parameters and equipment, data acquisition procedures, and participant recruitment and retention) and data analysis (approaches to segmentation and parcellation, registration, and curve fitting). In Session 2, expert panelists will provide a ‘behind the scenes’ look at important decision points and strategies adopted in their own research designs, stimulating a live discussion of solutions to challenges inherent in longitudinal neuroimaging. Finally,  Session 3 will showcase new and exciting work utilizing longitudinal approaches discussed in preceding sessions.

Meeting Organizer

Lilla Zöllei, PhD, Massachusetts General Hospital / Harvard Medical School, USA

Invited Speakers

Sandy Jacobson, PhD, Wayne State University, USA

Fleur Wharton, University of Cape Town, South Africa

Joana Alves sa de Almeida, Geneva University Hospital

Josepheen Cruz, MD, PhD, Developing Brain Institute

Symposium at OHBM 2021

Emerging Research in Infant Neuroimaging: A FIT’NG Overview
June 21, 2021; Virtual

Infant neuroimaging studies have unique potential to elucidate early brain developmental trajectories and how different experiences may alter these trajectories. With large-scale initiatives, like the Developing Human Connectome Project, the Baby Connectome Project, and the HEALthy Brain and Child Development Study, more and more researchers are joining this exciting field. However, despite the potential of and interest in infant neuroimaging, the overall field is still nascent and relatively few infant neuroimaging talks have been presented at OHBM. Here, we offer four cutting-edge infant neuroimaging sessions exploring a wide range of topics. First, a systematic review presents an overview of different common space templates used in infant neuroimaging and how the lack of standards hurts infant neuroimaging. Next, we present two talks on individual differences in infant functional networks and connectomes. Finally, we present on how experienced discrimination of BIPOC pregnant women affects amygdala and hippocampus connectivity in their infants. By attending this symposium, researchers will gain a greater understanding of where the field of infant neuroimaging is heading.

Organizers

Dustin Scheinost, PhD, Yale University

Brittany Howell, PhD, Virginia Tech

Lilla Zöllei, PhD, Massachusetts General Hospital/Harvard Medical School

Alice Graham, PhD, Oregon Health & Science University

Presenters

Silvia Gini, University College London

Alexander Dufford, Yale University

Lucille Moore, Oregon Health & Science University

Marisa Spann, PhD, MPH, Columbia University Irving Medical Center

FIT’NG Workshop at the Flux 2020 Congress

FIT’NG Together with HBCD and ABCD: Important Considerations in the Age of Multisite Imaging Studies
September 9, 2020; Virtual

This workshop was particularly timely given the importance of understanding early brain development through fetal, infant, and toddler periods with neuroimaging (FIT’NG) and the corresponding establishment of NIH multi-institute and multi-site initiatives, such as the HEALthy Brain and Child Development (HBCD) Study. Scanning fetuses, infants, and toddlers is associated with unique challenges that limit the acquisition of quality images and reduce power needed to detect real, reproducible, and non-spurious findings. This pre-conference workshop was a collaborative effort of FIT’NG, HBCD, and the Adolescent Brain Cognitive Development (ABCD) Study, that focused on important design considerations at the single and multi-site study level. A hands-on workshop with the ABCD Study’s online Data Exploration and Analysis Portal (DEAP) included demonstrations and tutorials featuring tools and methodologies for analyzing data from large, multi-site neuroimaging studies. This workshop also provided a forum to facilitate communication and collaborative science amongst early childhood and adolescent neuroimaging scientists.

Organizers

Alice Graham, PhD, Oregon Health & Science University

Dustin Scheinost, PhD, Yale School of Medicine

Marisa Spann, PhD, MPH, Columbia University Irving Medical Center

Lilla Zöllei, PhD, Massachusetts General Hospital/Harvard Medical School

Michelle Freund, PhD, National Institute on Drug Abuse (NIDA)

Elizabeth Hoffman, PhD, National Institute of Drug Abuse (NIDA)

Featured Topics & Goals

Topics:

  1. A series of brief talks and breakout discussions related to current trends in FIT neuroimaging.
  2. FIT’NG into HBCD – all you want to know about HBCD. How can early career scientists find a voice (and funding!) in the context of large-scale efforts such as HBCD and ABCD?
  3. A tailored open dialogue with NIH program officers (from multiple institutes) for FIT’NG scientists.
  4. Tools and methodologies for analyzing data from large, multi-site studies (ABCD’s Data Exploration and Analysis Portal).

 

Goals for Attendees:

  1. Provide up-to-date advances in the early childhood neuroimaging field related to data processing and analyses procedures of large datasets, and information regarding how to access existing large datasets.
  2. Critical thinking about both the challenges and potential solutions for the evolving field of early childhood neuroimaging, as well as potential funding challenges and solutions unique to this field.
  3. Encourage collaborations for future studies or manuscripts, as well as resource sharing amongst FIT’NG scientists.

FIT’NG Workshop at the Flux 2019 Congress

FIT’NG In: Establishing Best Practices for Infant Neuroimaging
August 29, 2019; New York City, NY, USA

There are unique challenges with the use of MRI during early brain development in humans.  The workshop provided a forum to discuss these challenges and approaches to improving MRI data collection, processing, and analyses with infants.  The aim was to facilitate communication and collaborative science amongst the community of scientists using MRI to study infant brain development.  This workshop was particularly timely given the recent announcement of the HEALthy Brain and Child Development Study, a large-scale NIH initiative to examine brain development from infancy through early childhood.

Organizers

Alice Graham, PhD, Oregon Health & Science University

Dustin Scheinost, PhD, Yale School of Medicine

Marisa Spann, PhD, MPH, Columbia University Irving Medical Center

Lilla Zöllei, PhD, Massachusetts General Hospital/Harvard Medical School

Presenters

Brittany Howell, PhD, Virginia Tech

Rebecca Knickmeyer-Santelli, PhD, Michigan State University

Emma Robinson, PhD, King’s College London

Dustin Scheinost, PhD, Yale School of Medicine

Christopher Smyser, MD, Washington University in St. Louis

Cameron Ellis, PhD Candidate, Yale University

Sooyeon Sung, PhD, University of Minnesota

Featured Topics

The workshop presented talks related to three important areas in infant and toddler neuroimaging: 1) scan and data collection procedures, 2) data processing and analyses procedures, and 3) unique discoveries and applications of infant neuroimaging studies.

  • Scan and Data Collection Procedures: Obtaining high quality neuroimaging data with infants is extremely challenging and represents a barrier to progress in developmental neuroscience. This portion of the program focused on current best practices for obtaining neuroimaging data with infants during natural sleep. The presentation brought together and synthesized information gleaned from different leading researchers regarding the setup and procedures used to scan infants. The emphasis was on information that was not easily accessible without having contact with these researchers (i.e. tricks of the trade).
  • Data Processing and Analyses Procedures: The development of automated tools for brain morphometric analysis in infants has lagged significantly behind analogous tools for adults. Similarly, common standards used in adult functional MRI analyses (such as template space, functional parcellations, MNI coordinates, and canonical hemodynamic response functions) do not exist for infants. This portion of the program focused on a summary of technical challenges that developers face, an introduction to tools that are currently available to the scientific community, and a discussion of needed standards and capabilities that are still missing.
  • Unique Discoveries and Applications of Infant Neuroimaging Studies: Given the challenges associated with collecting and processing infant neuroimaging data, it is important to ask what insights this work has provided. What has it helped us understand about trajectories of brain development?  And how does the early environment influence brain development?  Presentations highlighted the utility of this methodology and provided real world examples of studies in which the right data collection and processing has occurred and allowed for answering important scientific questions.